rs38211605 SNP Detail

Summary

• ID
  rs38211605
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:69768798 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCCTCTCG ATTAATGAAC
  ATTTGGGCAG CATCTGCCAT TCAGCTTCCA CTCCAGGAGG GGGAGGCATC GTAGGCTCCA
  CTGGGCCGAT TGTGCTGAAG CGCGAATTTG AGCTACTGGC AGCTTTCTGC TCTTTCTCAC
  AACACACTTT CAGCAGGATG GGAGCGCCAG CATTACGCAG AGGGAGCCTT ATGCTATTGG
  R
  CCGTGGTGTC TCCATGCAGG AAGCAGGGTG TCCCCCAAAG CTGAAGGTGG TTGGGGGGCT
  GGGAATGAGC CAGTGGAACA CATGCCCATG CTTGGTGCTT TTTACAGCTC TCTTTCCTTT
  CAGCTCTTGT ATTTAGTGCT TTTATTTCTT AACCACTTTA TGTCGGTCAC ATTTCTTATC
  TCTTGGCTTC TCCTGACACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss50977776	NES13927088	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs38211605					SNP	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50977776	NES13927088	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:69768798 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13263	CpG island 13263	44 bp distal
Rr578229	regulatory region 578229	1554 bp distal
Rr578230	regulatory region 578230	1035 bp distal
Rr578231	regulatory region 578231	1181 bp distal
Rr578232	regulatory region 578232	1132 bp distal
Rr578233	regulatory region 578233	131 bp distal
Rr578234	regulatory region 578234	within coordinates
Sptssb	serine palmitoyltransferase, small subunit B	1525 bp upstream
Tssr903	transcription start site region 903	1601 bp upstream
Tssr33558	transcription start site region 33558	1564 bp upstream
Tssr33559	transcription start site region 33559	70 bp upstream