rs38210899 SNP Detail

Summary

• ID
  rs38210899
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108203313 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGAACCAC CCCAGGCCCT
  TTCCTGCCCC TAGGGCCTTT GTATCATCAC TCTTTCCTTC TACCATGCTC TTCTGCCTGA
  CTCCTACCCC TCCCCCTTTC CCTAGGATGG CCTCTGTCTT CACTTTAGGA TCTCAACCTA
  AATGTCTCAG CTGGGTTTTC TCTCACCAGT CAGAATTAAA CTGCTGCCCC ATTCGATGTC
  R
  CCTGGTTTTA ATTTCTGTTC TCTCTGGAGG TACTGTTGGG GGTGTGACCC AGGGAATTGT
  GACTCCGAGG CAGCTGCTCT GCTGACCTAC CCCCAAGGCT GGCTCGGATT CTTTGCATGG
  ATGTATAGTG ACCAAATCCA CCCTGTTTTG ATCTTGTGTG TTTACTGTCT GCCTGGACTT
  GGATGTGTGC CTTAGGACAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51819434	NES14773433	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	G	A	G	G	G	G		G	G	A	G		G
ss133497773	ENSMUSSNP5116256	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						G
ss321892113	CHEV_6_108176346	CHEVERUD	SCREENING_POP	f	SNP												A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs38210899					SNP	A	A	A	A	A	G	A	G	G	G	G	A	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51819434	NES14773433	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108203313 () rs orientation: forward

Symbol	Name	Function Class
Itpr1	inositol 1,4,5-trisphosphate receptor 1	Intron
Rr636058	regulatory region 636058	1326 bp proximal