rs38209965 SNP Detail

Summary

• ID
  rs38209965
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:65735583 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCTCTAGA CAGTGCTCAA
  CACCAATGGA TGGGCCTTAG GACCAGGGCA GTAATTCTCC CTTCCCTAGG CCACACTCAC
  CCAGGGCTCA GGACAGAACC TCCTCTATGA AAGCTTTGAG TCCCTGCTGT ACTCTGTTTC
  CCACCCTGCA ATGTCTTTCA CAAAGCTGGC CTGGCAAGCT TCTTTTCATG CCAGTGTGAC
  Y
  GTGCCAGTGC CCTGCTTGAA ATATCTTCCC ATGATCCAGC TGGCCCTCTC AGAGCCAAGT
  AAAATCTCTA GCAATAACAC ACCACCAAGG TTCTTATCTG CCTCGCTCAC TTCCTCCTAC
  CCCAGTGCTG ATCTCTTCTC CTGTGTCTAT AAGCTGAGGC TTCTAGCTGC CGTGTTCCAT
  TCCTGGATGT GTCTCTCTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50963774	NES13941987	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38209965					SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50963774	NES13941987	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:65735583 () rs orientation: forward

Symbol	Name	Function Class
Gm37359	predicted gene, 37359	954 bp downstream
Lekr1	leucine, glutamate and lysine rich 1	Intron
Rr577737	regulatory region 577737	within coordinates
Rr577738	regulatory region 577738	1090 bp proximal