rs38201565 SNP Detail

Summary

• ID
  rs38201565
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:91180236 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGGACCAT CAGGACCCTT
  TATGGATTCC AGCCAAACAG CTACCATTAG GAGGCTCACC CCCCACTCAG CCTCCCTGCC
  TTATGTCTTT GGGAGAGCAA TAATCTTGAA CTGAACTAAT CAACACAGCC CATTCCTACT
  GCAGTAACTG GTTCAGGCCT GGTTACCTAC CTGAAGCCTA GGACTATGCT TGGTGCCACA
  R
  GCTGATTTTT GTCACCAGAA GGAATGGCCT TGGAAGAGGT GGAATAAAGA TCCAGTATGA
  GAGATGAGAG TAAAGAACTT CAACCAGGTG ACACATCTGA GCTCCTGGAT CCAGCCACAC
  TTGAAGCCCA TCCCTCTATT CTCAGTACCA AAGCTCTGTG TTCCATTCTG GCATAGGCGT
  GTTTGAGTCA AGCACTCTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51363703	NES13733022	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38201565					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51363703	NES13733022	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:91180236 () rs orientation: forward

Symbol	Name	Function Class
Rr634420	regulatory region 634420	1701 bp distal
Rr634421	regulatory region 634421	881 bp distal