rs38200348 SNP Detail

Summary

• ID
  rs38200348
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:97270156 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACCTTGCC ACCTGGGCTT
  CAGATCCGAC CAGATGGTAC TTGAGAATCC GTCGAGAGGA ATGTGGAGGA AAAGCCTTCA
  GCCAGGTCAC TTGTCAAGAC TTGACTGCTG AAGGCAACAC TGGCCACTGG TAAGGCAGGG
  CGTTTTCTAT TGTTGACTGA AAAGTGGAGG GTGAAGCTAG CAGGAGGTGG AAGAGGCTAG
  Y
  TTTGCAGAAG GGTGGATCCA GGAGATGACA AGGGTACAAT TTGGAAGCAG AGCCTGATTG
  AAGGAATGTT ACTGGGTGTC ACTGGTTATC ACTGGGTTTC TGCTCTTCTC TTTGTGGAAC
  CAGTCCTGCC CCATGCCTGG GCTGCACAGG TGACTCGGCA GCTCTGTGTG TGTCTAAGCC
  TCACAGACAG CCCTGCTCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51772738	NES14782436	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs38200348					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51772738	NES14782436	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:97270156 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
D6Mit326	DNA Segment, Chr 6, Massachusetts Institute of Technology 326			1258 bp distal
Frmd4b	FERM domain containing 4B			Intron
				Noncoding-Transcript-Variant
Rr635133	regulatory region 635133			1412 bp distal
Rr635134	regulatory region 635134			within coordinates