rs38200282 SNP Detail

Summary

• ID
  rs38200282
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:135369545 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCCTCCAC ACACTTGTGA
  ATGTACACGT ACAGACAGAC AGCACATACG TGCACATGAT CTTAGATATG TATGCTTCTG
  TTCTGATGAT AAATAGATTA CTTACTGAGC TACAGAACTT CAAGGCCTTG AAAGAATTAC
  AGGCAGGAGT TACACAACTT ACAAAATGAC TGGCAATACA ACTGAGAACA TGATGGAGCA
  S
  AGGGCTCACT TTCTCCCGCC TCTATTTTCT TTTTCTTTTC GTCGTCGTCG TCGTCGTCGT
  CTTCTTTCTT TCTTTCTTTC TTTCTTTCTT TCTTTCTTTC TTTCTTTTTT TTTTATCGAG
  ACAGGGTCTC TCTGTGTAGC CCTGGCTGTC CTGGAACTCA CTTTGTAGAC CAGGCTGGCC
  TCGAACTCAG AAATCCACCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ
ss51649247	NES14653799	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ
rs38200282					SNP	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51649247	NES14653799	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:135369545 () rs orientation: forward

Symbol	Name	Function Class
Nfkb1	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	Intron
Rr585759	regulatory region 585759	1274 bp distal
Rr585760	regulatory region 585760	1624 bp proximal
Tssr35804	transcription start site region 35804	471 bp upstream
Tssr35805	transcription start site region 35805	1298 bp downstream
Tssr35806	transcription start site region 35806	1309 bp downstream
Tssr35807	transcription start site region 35807	1329 bp downstream
Tssr35808	transcription start site region 35808	1370 bp downstream
Tssr35809	transcription start site region 35809	1407 bp downstream
Tssr35810	transcription start site region 35810	1432 bp downstream
Tssr35811	transcription start site region 35811	1499 bp downstream
Tssr35812	transcription start site region 35812	1518 bp downstream
Tssr35813	transcription start site region 35813	1559 bp downstream
Tssr35814	transcription start site region 35814	1583 bp downstream
Tssr35815	transcription start site region 35815	1614 bp downstream
Tssr35816	transcription start site region 35816	1631 bp downstream
Tssr35817	transcription start site region 35817	1701 bp downstream
Tssr35818	transcription start site region 35818	1729 bp downstream
Tssr35819	transcription start site region 35819	1761 bp downstream