rs38200038 SNP Detail

Summary

• ID
  rs38200038
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:39162856 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTTTTTAA GCTTTTCTTC
  CTATACAAGC TGTCACAATT CTCCTAACAG TAGAGAATCC ACTGTTTACG ACAGCACTGT
  GCATCTGTAG GGGTGAGGGC AATAGGACCT CTGCTCAATC GTTTCCATCC GTGAACATTC
  TCACTGCCTT TGGTGAGTGT GGTGGTGACA GCTTTAGCAC TTTCTATTGT CTTATCTTCT
  S
  AAATTGTTGC TTAGTTGGCT GGAAGAGGGG TTGCGTAGAG GAATGGACTC TTGACGAGAA
  CAGAATTGAT AACGAACCAG TATTCACCAG GATCTGCCAA ACATTTTTTT CTACCTCTTG
  GATAATGCAC CCATTTATAG TCTCTACTCT TGGAGCTGTA AGAGTGGGTG ATCAAATACT
  TTTAAGAGCC CATTAGATTA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51607944	NES14845621	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	C	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38200038					SNP	G	G	G	G	G	G	C	G	G	C	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51607944	NES14845621	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:39162856 () rs orientation: forward

Symbol	Name	Function Class
Gm67109	predicted gene, 67109	within coordinates
Kdm7a	lysine (K)-specific demethylase 7A	Intron
Rr628970	regulatory region 628970	1455 bp proximal
Rr628971	regulatory region 628971	1473 bp proximal