rs38197071 SNP Detail

Summary

• ID
  rs38197071
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:72859469 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGCCTTCC GAAACTCATC
  CATGAAACTC ACTCTCATTT CTTTTCTCCT CTCCGTTGAG CATGAGCTCA TGATTCTGCT
  ACCCAGCATT ACCTACCCAG TCTCAGGGGA CCAGAGCTCC ACACAGCCTG GTCTATTTTC
  ACAATGAGAA CATAGCTAGG CATGGTGGAT AGTTTGAGGC TAGTCTGTGC TACCAAACAA
  R
  ACTGTCTCAG CAAGGTGTGG CTGGGAGCTG GAGAGCTGGT AAAATAGGAC CCAGGCTCGG
  ATCCTAGTAC CTATATGGTA GCTCACAATC AACCCTAATT CCAATTCCAA GGACTGTGAT
  ATACCTCTTC CTGGGTTTCA TGGGCACCAG GGATATATGT GGTACAGGTA AATATAATCG
  TGCTAACTAC TCATCAATGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51692016	NES14821815	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38197071					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51692016	NES14821815	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72859469 () rs orientation: forward

Symbol	Name	Function Class
6030456E01Rik	RIKEN cDNA 6030456E01 gene	1119 bp downstream
Kcmf1	potassium channel modulatory factor 1	Intron
Rr632324	regulatory region 632324	923 bp distal
Rr632325	regulatory region 632325	254 bp proximal