rs38196620 SNP Detail

Summary

• ID
  rs38196620
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:162069354 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAATGGAAA GAATAGAAAG
  AAGCAATTGT ATTGTAATTA TAAACTGGTG ATCAGATATA AAATTGTTTT TCTTTGTTCT
  TCAGTTTCCC TACGTCTCCC CATCTACTTT CCAATAATAT GAATAATATT AAAATCTAAG
  CTGACATCTG TTATTGCTTG TTTAGTGCAG GGCTTGTCTT GAAGTCCTTT TTAGGATGCA
  R
  TGAACAAAGT ATGTCAAAAA AAATGATGCA GGATTAAAAA TAACCTGACG GTAGAAATAA
  ACCCAATCGC ACAACATAAA AAGAAAGGGT CCCCGGGGTT CATCACTGGG TAAGTCCCAG
  GATGAAGGCA GCTTGACTGT GTTAGGTACA GATCTAACTT GATTGACTGT AAACATACTA
  ATCCAATGCA GTCAAAGCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss51399848	NES14461848	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs38196620					SNP	A	A	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51399848	NES14461848	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:162069354 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dnm3	dynamin 3			Intron
				Noncoding-Transcript-Variant
Rr372349	regulatory region 372349			1127 bp upstream
Rr421941	regulatory region 421941			1490 bp proximal