rs38193368 SNP Detail

Summary

• ID
  rs38193368
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:147160927 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTAGTTTTA CAAGAGAAAA
  AAAAAAAGAT GTTTACATGG TAAATGAAAA AACTCCATTG TTTGAAAATA GCTCCAGTGT
  CATGGTGAGA TTTCAGGACA GACCTAGATC CAGGGGCGGC AGGTACTCTA ACATACTTGG
  TAAAGTGCTT AGGACTGGAA TGTTGATATC CTTTAAGTAT TACTAAATGT CATATCATGT
  K
  TTAGGCAAAA AGAATAGAGT TGTAGCGCTG CAGCTCTAAA TGAAATTGCT TCTGTTTGTA
  TAGAATCTGC AGTGTGGATG CCTACACACT ACAGCTCAAT ACCAAGAAAG GACACACAGG
  CTCCACGGTC CATTAAGCTT CAGGTTTGCC TTGATGTGGG CCTCTCTGAT GTATTACAAT
  GATACCCTAT TTTTGTTGAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss51046994	NES13892180	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	T	G	G	G	T	T	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs38193368					SNP	G	G	G	G	G	T	G	G	G	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51046994	NES13892180	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:147160927 () rs orientation: forward

Symbol	Name	Function Class
Rr587152	regulatory region 587152	39 bp proximal