rs38183671 SNP Detail

Summary

• ID
  rs38183671
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:131307822 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCACTGCTA TGTCTGTCCC
  CATTACTTTC CAGCTGAAAT GTATCACTTT TTACTGCTTG GGTTCATAAA CACTGGAAAT
  AAGTTGTTGT TTTTTTTACT GTCTCATTTA CTAGGTGGAT ATGCAGTGGG TGCAGGTTTT
  GGCAGAAGGT TGGGCGACTC CTCTGAACGG CTTCATGAGA GAGAGGGAGT ACTTGCAGTG
  Y
  CTCCATTTCG ATTGTCTTCT GGATGGTAAG ATAGTCCACG TCAAAAATTG AGTTGTGTGT
  GGAGGAGGCA TGGCATGGTT TAAAGTATTT GTCACGTCTC GTAAAGGTAG TCATGGCGCC
  TCTCTCAGTA GAGCTGTCAT GAAGACTAAG CTGTTTTCGT TCTGAACACT TTGAGTGAAC
  CGTGGGATCT CGTTTCCACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51640970	NES14656479	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38183671					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51640970	NES14656479	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:131307822 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Papss1	3'-phosphoadenosine 5'-phosphosulfate synthase 1			Coding-Synonymous
				mRNA-UTR
Rr585372	regulatory region 585372			899 bp proximal