rs38182639 SNP Detail

Summary

• ID
  rs38182639
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:72591846 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAAAAAAA AAAGGACCAC
  GAGATGGAGG CTGAGGCCCG TGGAAATCTT TATGGCTTAA CTGTGGGGCT AGAGTTAAAG
  GTCTACCAGT TCTTTTGCCA GAGTTCTAGG TTTAAGCAGG GTGGGGATAA TTACTGATTG
  TTTCCTATCC ACAAACACTT GCTTTGTGCC CACACATTGT TTCAACAACT TTTCTCTAAT
  Y
  TACTGCTCTC AACATGGACA TTTAGATGTA AATGAAGAAT GTACACTCTC CATTCTTTAT
  GCCCAAAGGC TATCACAAAT TGAACTCTTC AATAAGTCAA GTTACTGAAA TTGTCTTCTA
  AATCTCATGG CTCAGTAGGA AATACAATAA TTTTGTCATA TAGAGTTGTT TCTAAAGTTG
  TTTCATGGGT AACACTTTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51695139	NES14819715	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	C	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38182639					SNP	T	T	T	T	T	T	T	T	T	C	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51695139	NES14819715	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72591846 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17549	CpG island 17549	1275 bp proximal
Gm20536	predicted gene 20536	within coordinates
Gm67593	predicted gene, 67593	1910 bp upstream
Rr399708	regulatory region 399708	1779 bp upstream
Rr632243	regulatory region 632243	345 bp proximal
Rr632244	regulatory region 632244	1420 bp proximal
Rr632245	regulatory region 632245	1873 bp proximal
Rr632246	regulatory region 632246	1965 bp proximal
Tgoln1	trans-golgi network protein	Intron
Tssr57152	transcription start site region 57152	1992 bp upstream
Tssr61478	transcription start site region 61478	1862 bp downstream