rs38179316 SNP Detail

Summary

• ID
  rs38179316
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:65534030 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGAGCAAG GTGAAATAAA
  CAAATCTGAG GTGATGGCCA GAGGACCAGA TGAACAGAAC TCCTGTCGTC AGGGCTTGAG
  AAGCTGCCGC AGAACGCTGC CTCTTTTAGC TCTCTGTGAA ACTCAGCCAG CCACAAAGTA
  CTTCTTGTAG CCTCATAGCT TTCTGCCACT CCTTCCAAAG TTTCCATCTC CTGCAATAAC
  Y
  TGATTATGTG TCTGTGTCTT GCTGACTGAA AAGGCCAAAA GAACATGGCC TCCTGGTTAA
  TACACACCTG ATGCTCTTGA AGTGCCTGAT CGGTGCATGC CTAGTCAGGA CTCAGCACTC
  AGTCAAGTTT GCTGAATGAA GGAGGAGGAT ATAGGATTAC TTGAGGGGAC CGGTTGAGGC
  TGTGTTAGAC CAATGAGAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50965462	NES13945909	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38179316					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50965462	NES13945909	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:65534030 () rs orientation: forward

Symbol	Name	Function Class
Rr577712	regulatory region 577712	284 bp distal
Rr577713	regulatory region 577713	454 bp proximal