rs38175636 SNP Detail

Summary

• ID
  rs38175636
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:149334047 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCCATTTC TGAGAGGGGA
  GGGAGTGCAG AAAAGATGGA AAGTGTAATG GTGTGTTACC ATAGTAAGAG AAAACAAAGT
  GATTTTAATG TTGCAGTAAA GGAAAGTCTA GACAAAGAAG AGTGCATTCC TTTGATGGAA
  AATAGCTTAG TGGTTTGAAA TAGTTTACCA AGGCAGTGCT GTTTGAAACA CAACGTGCTT
  Y
  TTACCATCAA ATGAAGCAAG CAGAATAAAA ATTCTACAAC ACCTGGGGTG AGGGTGCTGG
  AGAGATGATG GTTCGGTGGT TATGAGGTGT GCATACATAC ATGCAAACAC TCATACACAC
  ACACACACAC ACACACACAC ACACACACAC ACAAATAAAA ATAACTTAAA ACCTTCAAAA
  GTAAATGGCA AAAGTGAAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51207790	NES13811530	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs38175636					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51207790	NES13811530	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:149334047 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17095	CpG island 17095	1024 bp proximal
Gm20488	predicted gene 20488	within coordinates
Medag	mesenteric estrogen dependent adipogenesis	1167 bp upstream
Rr625496	regulatory region 625496	677 bp proximal
Tssr49905	transcription start site region 49905	1209 bp upstream
Tssr49906	transcription start site region 49906	1516 bp upstream