rs38166381 SNP Detail

Summary

• ID
  rs38166381
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:90756596 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATGGAAAA AGGACAAGCC
  CCTGCTATGG GCATGGTGCT CACCACAGTG GATAGCCACC AGCACTTGGT GAGCAGCACA
  GTAGCTTCTC TGGCCCTGTT TACCTTATGA CTATACTCTT AATTAGCCTT GTAACTACAG
  CCAAAGTATA TCCCCCTGTG TCTCAGTTTT TTAACCTAGA AAGTGGGATG TGCTCACCTC
  Y
  CTCTGCTCAG GTCAGTGCCT TCAATGGAGA GTCACAGGCA GCAGGTGTCA GAGCCTCAGC
  AATTATATCA CTATCCTGCC TTTCTTTGTA GCCAACTCCC CAATGCTTCC TCCTCACCTT
  TGGATAGTCT AAATAAACAA GTACTGTCCA CTGCCGGCAA CCAAATCCAG TGTCTACCCC
  CAGGCATCAT TCAGACATCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51360253	NES13739262	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38166381					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51360253	NES13739262	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:90756596 () rs orientation: forward

Symbol	Name	Function Class
E130314K07Rik	RIKEN cDNA E130314K07 gene	within coordinates
Iqsec1	IQ motif and Sec7 domain 1	Intron
Rr1762	regulatory region 1762	881 bp upstream
Rr634323	regulatory region 634323	379 bp distal
Tssr62048	transcription start site region 62048	1668 bp downstream