rs38165787 SNP Detail

Summary

• ID
  rs38165787
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:135208051 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAAGTCAGC GCCAGGCCCC
  ATTGTGACCA GGTCTGTTGG GCTTGGTGTG CTGCTTCCAG AAACTCAGCT ACTCTCTGCC
  ATGTGTGTGT GAGCAGCGGC CCTCCGGGTT TTAGGATGAG CTCGGAACAG AGTGCTTGCA
  AGGTATTTAT GGACACCGGA GAGCCAGGGT GTAGACAGCA GGACTACCAC ACAAAGTGAC
  R
  TTGGAGACTC TGCTCTCAAG CCATCATGGT TCAACTTTTC ATTTGGTTCA GGCATGGGAG
  ATTCTGGCAT ACAAAGTCTT GACACTGACA CCTCAGAGGT CTATATCCTG GCCCTGTGTG
  ACATCTGCTA GTGCCTGGAA TGACAAGAGC CTTTCCATTG TGTTTGTAGC TAAATTCTGC
  CACCTTCCCT ACTGTGCAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51652010	NES14651486	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	G	A	G	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38165787					SNP	G	A	A	A	G	A	G	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51652010	NES14651486	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:135208051 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Manba	mannosidase, beta A, lysosomal			Intron
				Noncoding-Transcript-Variant
Rr585725	regulatory region 585725			546 bp proximal