rs38163991 SNP Detail

Summary

• ID
  rs38163991
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:102184280 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAGTCTGG GTTGCATGAT
  TTTGAGATGT CTCAGAACAA CAAAACAAAA CCCAAACCAA CCAACCAAAG AAACAAACAA
  AAAACTGCAG CAGGTGAAAC TTGATTCCAA TAATTCTGTG TAACCCATAC CTCATTACTC
  CTCCTCCAAA AGGCACTTGC AGGATCCTGG TTTCACAACT GTTCCTCGTT CTCTAGTGTC
  R
  TTGCCTCACT CAGCAACAGT GGCAGCCTAG AGTTCTTCAC CTGCTCAACA GGGGTCAGCC
  TGACCTCCTT AGTTCTAGGA GCAGAAAACT GTGCACCTCC ACAGAGGCCA CTATTCCTAA
  GTGAGCCTTT AGTATCTACT CTTTCCATGG CCATAAATTT CCCATCATGC CTTCCACTCT
  TCCACCTCCC ACCTACTCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51586151	NES14666064	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	A	G	A	G	G	G	G		G	G	G	G		G
ss135555736	ENSMUSSNP1211439	ENSEMBL	ENSEMBL_Sanger	f	SNP								G
ss320855325	CHEV_3_102080887	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs38163991					SNP	G	A	G	A	G	A	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51586151	NES14666064	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:102184280 () rs orientation: forward

Symbol	Name	Function Class
A230001M10Rik	RIKEN cDNA A230001M10 gene	within coordinates
Gm65464	predicted gene, 65464	within coordinates
Rr582219	regulatory region 582219	1365 bp distal
Rr582220	regulatory region 582220	971 bp distal
Rr582221	regulatory region 582221	954 bp distal