rs38163808 SNP Detail

Summary

• ID
  rs38163808
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:116645401 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CACGTAGAAT TTCCTTTAAG TTAAGCAGTG TAGCAGAAAG
  GCCTTCTTCC TCAGGGCTGG GAGCTACTAA GACCTGGGTG ACTGCAGATG CCTCCTCTCC
  S
  AGCCTCGACT TTTCCATCTC TACAATAAGA ATATTGCTCT CTATTGGCTT TGGCATTTCC
  TCAGGTGCAG TGCTCTTATT CAAATAGAAA ATAAGCAGAG                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51859267	NES14882429	PERLEGEN	MM_PANEL2	f	SNP	G	G	C	C	G	G	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs38163808					SNP	G	G	C	C	G	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51859267	NES14882429	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:116645401 () rs orientation: forward

Symbol	Name	Function Class
Rassf4	Ras association (RalGDS/AF-6) domain family member 4	Intron
Rr637228	regulatory region 637228	151 bp proximal
Rr637229	regulatory region 637229	722 bp proximal
Rr637230	regulatory region 637230	1544 bp proximal
Rr637231	regulatory region 637231	1820 bp proximal
Tssr58383	transcription start site region 58383	945 bp upstream
Tssr58384	transcription start site region 58384	983 bp upstream
Tssr62604	transcription start site region 62604	49 bp upstream
Tssr62605	transcription start site region 62605	25 bp upstream