rs38160870 SNP Detail

Summary

• ID
  rs38160870
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:113582483 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCCCCGGCT CGATTTGGTG
  CTAGTGCTGA GGGTTGTAAG GGATGGGGCC CGCTCGGGCC TTGGGAATGG CTTTTCTAGC
  CCTGTATCTG CTTCATGGTA GGTGCTCTGG ATGCTTCTGT CTGGCTCCTC GGATTTTACA
  GGGCAGATGG TTTCAGCAGA GTCCACTTTT CCAAAAAACT ATTCCTAGGT GTGGCCGGCT
  R
  GTGACAGTCT TGATTTCTTT CTGCGTGCGT TCCTAGCCTT CTGGACTGAA AACCTGTTAC
  AGACTTCTTA TGGTCTCCGG AAGGGTTCTT TCAGGGACCT TCTTACACAA TACAAGACGT
  GCAGATGGCA TCCAGTGATC TTTTTCACTA GAGTGCTTTG GTTCTACTAA TTAGCAACTT
  TCAGCATCTT GGGGAGAAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51840379	NES14766159	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A		G	A	A	A		A
ss321911096	CHEV_6_113555516	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs38160870					SNP	A	A	A	A	A	A	G	A	A	A	A	G	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51840379	NES14766159	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113582483 () rs orientation: forward

Symbol	Name	Function Class
Brk1	BRICK1, SCAR/WAVE actin-nucleating complex subunit	Intron
Cpgi17850	CpG island 17850	165 bp distal
Gm44200	predicted gene, 44200	1953 bp upstream
Gm67049	predicted gene, 67049	1066 bp downstream
Rr636549	regulatory region 636549	740 bp distal
Rr636550	regulatory region 636550	995 bp distal
Rr636551	regulatory region 636551	776 bp distal
Rr636552	regulatory region 636552	227 bp distal
Tssr58230	transcription start site region 58230	754 bp downstream