rs38158269 SNP Detail

Summary

• ID
  rs38158269
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:17978798 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATAGTCCTG GCTGTCCTGG
  AACTCTGTAG GGTGTCCAGG CTGGAATCAA ACTCACAAAG ATCTGCCTGC CCCTGCCTGG
  AATTAAAGTG CTGGGATTAA AGATGTGCCC CACCATCCTC AGCCCTTAGT TTCTAAACTA
  CTGAGAAAGT ATACAAACTG TGTCTCTTCT TGCTATAATT AATTTTACTT CATTGTTTCT
  S
  CTTTAAAATG CTTAAGACCA GGCTGGGCAG GGTCTGCTCA GCAGCAGAGG GTGGTAAGTT
  TAGTTCCCAG GGCTCAGCTC ACTCCAGGCA ACAACAAACC TAAACTCAAA GAGCAAACAA
  CAGTTAATTA ATTGTTTCAA ATTTCCCTCC AGAGTCTTCC ACAGCTTTAC TCACTCCCAG
  TCAGTTATTA ATAGGAAACA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ
ss51883294	NES14902301	PERLEGEN	MM_PANEL2	f	SNP	C		G	G	G	C	C		G	G	C
ss148438448	ENSMUSSNP2912326	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ
rs38158269					SNP	C	C	G	G	G	C	C	G	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51883294	NES14902301	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:17978798 () rs orientation: forward

Symbol	Name	Function Class
Mill1	MHC I like leukocyte 1	474 bp upstream
Rr642879	regulatory region 642879	705 bp distal
Tssr64734	transcription start site region 64734	329 bp upstream
Tssr64735	transcription start site region 64735	362 bp upstream
Tssr64736	transcription start site region 64736	512 bp upstream