rs38150218 SNP Detail

Summary

• ID
  rs38150218
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:72873804 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCCT GGCCTAGAGC CTTCTCTGTG
  Y
  CCTTGGCTGC ACTGGTGTTT CTCAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss51691863	NES14821457	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	T	C	T	C	C		C	C	C		T
ss133287922	ENSMUSSNP2660034	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						T
ss321823139	CHEV_6_72846815	CHEVERUD	SCREENING_POP	f	SNP												T				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs38150218					SNP	C	C	C	C	C	C	T	C	T	C	C	T	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51691863	NES14821457	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72873804 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17554	CpG island 17554	1872 bp proximal
D530018E20Rik	RIKEN cDNA D530018E20 gene	902 bp upstream
Kcmf1	potassium channel modulatory factor 1	Intron
Rr632326	regulatory region 632326	1463 bp distal
Rr632327	regulatory region 632327	1445 bp proximal
Tssr57165	transcription start site region 57165	1879 bp upstream