rs38143107 SNP Detail

Summary

• ID
  rs38143107
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:145533357 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGACAGCTC TCAACCTGCC
  TTGGCTGGTA TCCGCTTGGC AACCTTAGTT CTTTCTGGTT TTGAGCGTTT TCTTCATTCT
  GTGAACTGGC AGATTGTTTT CTGCTCCTTT GCTTTTTCAT CCTGGTTGAA CTTTCTCCTT
  CTTCTTAAGC TTTCTTACCC TGTCCCCTTG GGTGTCAGTC CCTGCACAGC TTTCCACTGG
  W
  TTCCGTTACG AAGAAGGCTG CATGTTAGAG TGTGCCCTGC AGGCTAGAAA GAGTTAATAA
  TCTACTTTCC AGCATTTCTG AGTTACTGTC CAAGAGAATC TGAAGCAGCA AGAAAACCCG
  CCTAACTATA GAATGTCAGT CCAGAAGCGG TCCCGTTGCC GTGTTCTCGG GCACTTACTT
  GTTCAGGTAA GTGGGTTTTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51669770	NES14637707	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38143107					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51669770	NES14637707	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:145533357 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ddah1	dimethylarginine dimethylaminohydrolase 1			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr586848	regulatory region 586848			1547 bp distal
Rr586849	regulatory region 586849			within coordinates
Tssr32303	transcription start site region 32303			97 bp upstream