rs38139287 SNP Detail

Summary

• ID
  rs38139287
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:77592422 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GATAATTCTG CCCTGTAGGT AGGCATTGCT GGGTTCAGTC
  CTGGAGCACA TTGGTACCCA ATGGCTTTGC CCACGGCCTT GATGGATCAG ACTGGGAATG
  K
  AAATTGTGGA TTCCCAGCTC CAAGTGTGGA ATGTTTGCAG TCATCCCCGG GCTTACGCTT
  ACGTGATGCA TCAAGCTGCT ACCTAGCAGA TCAGCAGGAG                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
ss50501554	NES13695662	PERLEGEN	MM_PANEL2	f	SNP	T	G	G	G
SNP Consensus Information
SNP					Consensus Type	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
rs38139287					SNP	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50501554	NES13695662	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:77592422 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ark2c	arkadia (RNF111) C-terminal like ring finger ubiquitin ligase 2C			Intron
				Noncoding-Transcript-Variant
Rr541133	regulatory region 541133			213 bp proximal