rs38131886 SNP Detail

Summary

• ID
  rs38131886
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108042913 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCTTCCCCC CCACACACAC ACACACACCC CACCCCACCC
  CCGATATTTT TATTTTTTTT TTATTAGCAC ACGGGGTATC TAGTTTAACT ATGGCATTTT
  W
  AAAATGTTCA TTAGCAAATG TTGATTATAC ATAATAATGA GTTTTGTGAT GACATTTTTC
  CACATATGCA CAGAAGGTGT TTTGATGATA TGCACCACC                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss51821981	NES14764688	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	T		A	T	A		A
ss133494235	ENSMUSSNP4529526	ENSEMBL	ENSEMBL_Sanger	f	SNP		A					A
ss321891480	CHEV_6_108015946	CHEVERUD	SCREENING_POP	f	SNP									A				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs38131886					SNP	A	A	A	A	A	A	A	T	A	A	T	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51821981	NES14764688	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108042913 () rs orientation: forward

Symbol	Name	Function Class
Gm66771	predicted gene, 66771	970 bp upstream
Rr399804	regulatory region 399804	759 bp downstream
Rr399805	regulatory region 399805	452 bp downstream
Rr399806	regulatory region 399806	within coordinates
Rr636028	regulatory region 636028	981 bp distal
Rr636029	regulatory region 636029	897 bp distal
Rr636030	regulatory region 636030	633 bp distal
Rr636031	regulatory region 636031	128 bp distal
Setmar	SET domain without mariner transposase fusion	Intron
Tssr58052	transcription start site region 58052	899 bp downstream