rs38130941 SNP Detail

Summary

• ID
  rs38130941
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:188712257 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGGAATGTA GAACTTTTAT
  ATAAATATCA TAGTTCCTAT GTCATACAAT ACCAGTTTTG TATTTTAAAG CAAACTTTAG
  AAAAAAACTT GGAAATTACC AAGAAATAGT TCCTGTGCAC TTTTTAGCAG TATATAATGA
  AATCCTCAGA TCTCAGGCCA GTAGTGAAGT ACAGGAGATA CAGGTAAGGC ATTTAGCCAG
  K
  CTTGTGGGAA ATGGCCCTCT GGTTTCACTA AGCTTAGCAG GATGGAGAAG ACAAAGAACT
  AAAGCCATCA TGAATGATTC AAGTGGTGAT GACAGAACCC TGTTCAAACA ACTCCTGCAA
  AGCCCCATTT CAGACCCTAG GATGCATACC ACAGAAAAAG CACATGGCTG CACTTATGCC
  AAGAGCCACC AGGGGGCAGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51420034	NES14449513	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38130941					SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51420034	NES14449513	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:188712257 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Kctd3	potassium channel tetramerisation domain containing 3			Intron
				Noncoding-Transcript-Variant
Rr425733	regulatory region 425733			1585 bp distal
Rr425734	regulatory region 425734			within coordinates
Rr425735	regulatory region 425735			182 bp proximal
Tssr15705	transcription start site region 15705			1633 bp upstream