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rs38124097 SNP Detail
Summary
  • ID
    rs38124097
  • Variation Type
    SNP
  • Alleles
    G/T
Genome Location and Flanking Sequence
  • Location
    Chr6:85988229 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                ATCATGCTCT CCCCTGCTGC
    TGGCTGGTCT GGCCTAAGTG AGGACAGAGG CGATCTCTCT TCACATGAAA GCTGACCCAG
    GAGACACACC CCCCCCTCCC CTGCTGCCTC TCACCACGCT GTTGGCAGGT GCAGAGTGTT
    AGGAGAGGTT GCTCTGTTGG TACAGGACTG GGATGAGCAT TCAAGGTCAT CACTGTCCAT
    K
    CTCCCAGATA AACAGATGAG AGGAAAAGAA ACCCTTCTGG TTTGCGGTGC TCTCCAGAGC
    ACCACTTACT TTGAAGACAG TGTGTGGGCT CTAAGGAAGG CTCCGTGCTC AACCGTGAAT
    TGGGCTTACC CGTGAGGATC AGAGTTCAAA TCTCGGAACC CACACGGTGG CTCACACTGC
    TCAGTGCTCC CTAGTTCCCG                                            
    
    K = G/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss51757750 NES14802177 PERLEGEN MM_PANEL2 f SNP T T T T T T G T T T G T T G T
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs38124097 SNP T T T T T T G T T T G T T G T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss51757750 NES14802177 PERLEGEN MM_PANEL f SNP G/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr6:85988229 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
4930553P18Rik RIKEN cDNA 4930553P18 gene 1894 bp downstream
Gm66378 predicted gene, 66378 303 bp upstream
Rr633312 regulatory region 633312 983 bp distal
Rr633313 regulatory region 633313 1086 bp distal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory