rs38124097 SNP Detail

Summary

• ID
  rs38124097
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:85988229 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCATGCTCT CCCCTGCTGC
  TGGCTGGTCT GGCCTAAGTG AGGACAGAGG CGATCTCTCT TCACATGAAA GCTGACCCAG
  GAGACACACC CCCCCCTCCC CTGCTGCCTC TCACCACGCT GTTGGCAGGT GCAGAGTGTT
  AGGAGAGGTT GCTCTGTTGG TACAGGACTG GGATGAGCAT TCAAGGTCAT CACTGTCCAT
  K
  CTCCCAGATA AACAGATGAG AGGAAAAGAA ACCCTTCTGG TTTGCGGTGC TCTCCAGAGC
  ACCACTTACT TTGAAGACAG TGTGTGGGCT CTAAGGAAGG CTCCGTGCTC AACCGTGAAT
  TGGGCTTACC CGTGAGGATC AGAGTTCAAA TCTCGGAACC CACACGGTGG CTCACACTGC
  TCAGTGCTCC CTAGTTCCCG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51757750	NES14802177	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38124097					SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51757750	NES14802177	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:85988229 () rs orientation: forward

Symbol	Name	Function Class
4930553P18Rik	RIKEN cDNA 4930553P18 gene	1894 bp downstream
Gm66378	predicted gene, 66378	303 bp upstream
Rr633312	regulatory region 633312	983 bp distal
Rr633313	regulatory region 633313	1086 bp distal