rs38114160 SNP Detail

Summary

• ID
  rs38114160
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:97949173 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGTGTCTC CATGCTCAGT
  AAAATGGAAA CCTTTGAACA TTTTAATCAC GGGAGCTGGT GGTTGAGTCT GACAGTAGGT
  TTTTGTCTTA GCTGTTTAGT TTGTTGAATG TCAGTGACTA TGCACCTTCC GTGGTTCATA
  CACATGGAGA TGAGCCATCT CTGTTGTCAA CACCACTGCC TTTCAAGAAC TTTGCTAGAC
  R
  TGAGGGTGAG AGTATGATAC ACCTGCCCAA GCCATAGTGG AAGCACGTGG AAGCAAATGA
  TTCGGAATGC AAGTAGGAAT TAGCAAGCTA GAGAGGGGTC GCATCGTTCA GTGCCGTCTA
  GAGGGACAGC ATGCAGTGGT GCCATTAATA GACTGACATG TCCTGGTTCT TCTGTGGGTT
  TTCAAACCAT ATGTTGTATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51002336	NES13912278	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38114160					SNP	G	G	G	G	G	G	G	G	G	A	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51002336	NES13912278	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:97949173 () rs orientation: forward

Symbol	Name	Function Class
Notch2	notch 2	Intron
Rr581620	regulatory region 581620	683 bp distal
Rr581621	regulatory region 581621	439 bp distal
Rr581622	regulatory region 581622	757 bp proximal