rs38113745 SNP Detail

Summary

• ID
  rs38113745
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:112990144 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTAAAGGGT CTGTTTCTCA
  CCCCCCAGTT TCCTTTCAGA AACTGGAGCC TAAGTGAAGC GAAATACAAT TGGAATCGCT
  GCAAGGAAAC TTCTGGAGGG AAACAAACTA CCTGGCTTCC TAGGAGGGGC TTCTAACGTG
  CAGATGCCTC CAAGCAGAAG CCAGTCACAC GTCAAATGTA CAGAGGGAAC TGAGAGACTG
  R
  GGTGTAAATA AGAAAATCAA AATGGTGTGC AGTGGTGGTT CTCACACTGC GCCATGTTTG
  GGGACGCTCT GATAGACTGT GGTTCAATAA TTTTGAGGTG GAGGCCTGAG AATGTGCATT
  TCTGTGTCTG TGGGGACTAC ATAGTAAAGG CCTCTGAGGC AGAGAGGGCT ACCCCAAGCC
  TCAGCATCAA GCAAGACATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss51844066	NES14767502	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs38113745					SNP	A	A	A	A	A	A	A	A	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51844066	NES14767502	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:112990144 () rs orientation: forward

Symbol	Name	Function Class
Rr636433	regulatory region 636433	13 bp distal
Rr636434	regulatory region 636434	1967 bp proximal