rs38112612 SNP Detail

Summary

• ID
  rs38112612
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:17978756 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAAAC TACTGAGAAA GTATACAAAC
  K
  GTGTCTCTTC TTGCTATAAT TAATT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
ss51883295	NES14902300	PERLEGEN	MM_PANEL2	f	SNP	G		T	T	G	G			T	G
ss148438443	ENSMUSSNP1628431	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	T				G
ss322114470	CHEV_7_18830180	CHEVERUD	SCREENING_POP	f	SNP								T			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
rs38112612					SNP	G	G	T	T	G	G	G	T	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51883295	NES14902300	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:17978756 () rs orientation: forward

Symbol	Name	Function Class
Mill1	MHC I like leukocyte 1	516 bp upstream
Rr642879	regulatory region 642879	663 bp distal
Tssr64734	transcription start site region 64734	371 bp upstream
Tssr64735	transcription start site region 64735	404 bp upstream
Tssr64736	transcription start site region 64736	554 bp upstream