rs38109442 SNP Detail

Summary

• ID
  rs38109442
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108514206 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACCTAGAAA AGAACTAACC
  AGAACTTCAG CACTTGTGGT TAGCCTGCTT CCGGCTGTGG CTTCAGTTAG TCTGTGTGCT
  CTGACAGAGG AAGTATTTGC AACGATGGGA AGTGCATGAC TGGATTGTGG GAGGACCCGG
  GCAGACGGTG CCTCATAGCA TTGGCATGTG AGATGCCAGC AGCAAGCTGA CTGAGGAAGG
  Y
  GAAGAGGGAT AGCAGACCCA GAGTGGCAGA TGCCATGTGA TACCCACCCC CCCACACACA
  CACACACACA ACCACACACA TTCCCCACAG TGTAAACTCA CTTAGAAACA GGATGTCATG
  GTCAAGGATG GCTTTTCCAA AAATGCAAGC CAGTGGCACG CTTTTGATCC TGAGTAGACT
  TTAGGGCAAG AGTCTGCAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51812416	NES14767165	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38109442					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51812416	NES14767165	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108514206 () rs orientation: forward

Symbol	Name	Function Class
Itpr1	inositol 1,4,5-trisphosphate receptor 1	Intron
Rr636129	regulatory region 636129	1707 bp distal
Rr636130	regulatory region 636130	within coordinates
Rr636131	regulatory region 636131	990 bp proximal