rs38106717 SNP Detail

Summary

• ID
  rs38106717
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:113813884 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGAGTGAT GGCGGCCTAC
  AGTGAGTGAT GACAGCCCAC AGTGAGCCAT GGCAGCCCAC AGTGAGTGAT AGCAGCCCTG
  GCTGGGCAGA GCATTGCTGG ATGGTCATCA GGGCCTCCTT ATCCTGCTGA AATCACCCAG
  GAGCTTTCTG GTCAGCTGCA GGGTGGCCCC TTTTTGAACT GCTTTCTGCT TTCCTTTGTA
  M
  CCCCTGGCTG GCCTGCAGAG CCGTGTACCC AGTATACTCC TCAGCACGCA CTAATGGGTC
  CTGGCTTTAT TCTGTTGATG ATTCATATGC CGTGTGGGTG CTGCTCTGTA GGGCTGCCCC
  ATTGACTCAG GCATCAGGAT CAGCCCACTT TTAAAGGACT TTTCTCCATG GTGGGGGTGA
  GAGTGTCTCA GGGAGGGTGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51837680	NES14763280	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38106717					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51837680	NES14763280	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113813884 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Atp2b2	ATPase, Ca++ transporting, plasma membrane 2			Intron
				Noncoding-Transcript-Variant
Rr636604	regulatory region 636604			1588 bp proximal
Rr636605	regulatory region 636605			1763 bp proximal