rs38100081 SNP Detail

Summary

• ID
  rs38100081
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:82928067 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTGGCAAG TGGAGGGGAC
  TCCTCATCAG TCTGGTTGTT GACTCTCCTT AAATAAACAT GGCAGGGCAG ATTCCACTCT
  GGGAATGATC AGGACACATA GTTAAACTGT TACAAGAAAA AAAGAAGGGA GCTAACATTG
  GGGGACTTTG AACTGGAGCT ATTTTTCTTC ATGTTTGTTT TCTTTACATT GCAAAGCGGT
  R
  GTGAGGGTCA CATGACATGA GAGAATGTAG AAAATTGTTC CAACAACGAC AACAAAAATT
  GAGTTGATTC TTGCTGGGAA GACGAATAAT CCTGCATAGC TTTGAATCTG ATAGTCTGGA
  AGTATGAATT AAAAGCATTA AATTTTTTGA TTCATTTGCA TATGATACTC ATGTATCCTA
  AGCTGGCTTC AAACTTACTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50990178	NES13925914	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38100081					SNP	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50990178	NES13925914	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:82928067 () rs orientation: forward

Symbol	Name	Function Class
Rr578819	regulatory region 578819	within coordinates