rs38098987 SNP Detail

Summary

• ID
  rs38098987
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:66656881 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAGACAGT CCACAAGAGG
  ATTAGAGCCA AAGATGCCCA GCCTTGGTTG TCTCACTCAG CTCCATGTTG TTCCAAATTC
  TGCCAAGGTG CATTGAAAAC TCTTCAAAAA TACACTCCTT CGAATTACTT AATCACATGC
  TTCCCCCCAG ATCTCTTATT CATGTATAGA GTGTTCATTC TCAACAACAG TAATTGAAAA
  M
  TGTAAAATGT GAAAGGCACA TTTTCACTAT CCTTCCTGCC ATCTATTATG ATTTTGCTGT
  CTGGCTTGCA GCCCTGTAGC AGCCCACATG TAGGGGCCCC TCCTCCCACA ATTCCATCAT
  TCCCTGGAGA TGCTACGGAA CCTTGGTGCG GATGCAGCTT TCCTCCTTCC TGTGGAACCT
  CTCAGCACTT CTAGCCCACC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss50973448	NES13937974	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs38098987					SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50973448	NES13937974	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:66656881 () rs orientation: forward

Symbol	Name	Function Class
Gm65053	predicted gene, 65053	1935 bp upstream
Rr577865	regulatory region 577865	1946 bp distal
Rr577866	regulatory region 577866	1845 bp distal