rs38098924 SNP Detail

Summary

• ID
  rs38098924
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:120897179 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G TTATTAAATT TGCCTAATGG ATCTAGGGGA AATGTTCACG
  TGACAGGTTG GCAAGGGAAA GAATGAAACG CTCACACAGG AAAAAAAATA TGACACATTT
  M
  ATCTCCAGAC CTATAAGACT GAGTTTCCCG AATTTCTAAG AATTTAAACT TTAATTACAG
  ATAATTAAAA TCCCTATATA AATTCTGGGG ATTTCCTTTG A                    
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51606467	NES14664195	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A	C	C	A	A	C	A	A	C	A
ss60441591	NES15944803	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A	C	C	A	A	C	A	A	C	A
ss135713476	ENSMUSSNP6420064	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38098924					SNP	A	A	A	A	A	A	A	C	C	A	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51606467	NES14664195	PERLEGEN	MM_PANEL	f	SNP	A/C
ss60441591	NES15944803	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:120897179 () rs orientation: forward

Symbol	Name	Function Class
Gm65499	predicted gene, 65499	within coordinates
Rr397968	regulatory region 397968	1312 bp upstream
Rr584003	regulatory region 584003	1058 bp distal
Rr584004	regulatory region 584004	986 bp proximal
Rr584005	regulatory region 584005	1477 bp proximal