rs38096786 SNP Detail

Summary

• ID
  rs38096786
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:117157933 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGATTATT TTGCTTTTAT
  GAATCCCCAT GTGTCATTCT CTCAGAAGTG AACTCAGATG CTATGCATAT GAATTCTGTC
  CACTCTCTGC AGGATCTTGT TGTGCCCTGA GTCCACAGGA AACCTAGACG GACCCAAGAA
  TGATTTCAAA GTCCACTGTA ACTTGAAAAA GAGTCTTTTA TTATTACAAG TTGGAACTCA
  R
  ATCACCTGCC TCGCACTCAC TGTGTGAATG CTGGCAGTTG ACCTTGAGTC CAGAAAACAC
  CGGACAGTAT AGTTAGGAAT CCCGTGAATG TTCACAGAAA AGGGGAGTAG AGGGCTGTAA
  TCATTTGGTG GAATGGTACT GAAGTGGGAA AGGGGCGTTA ATGGGTGTCT GTTCAGGGAC
  TAATTTTATG GCAGTCATAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
ss51012380	NES13913486	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
rs38096786					SNP	A	A	A	A	A	A	G	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51012380	NES13913486	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:117157933 () rs orientation: forward

Symbol	Name	Function Class
Rr583842	regulatory region 583842	1972 bp proximal