rs38094099 SNP Detail

Summary

• ID
  rs38094099
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:83577865 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTCCTCCT CCTCCTCCTC
  CTCCTCTTCT TCTTCTTCTT CTTCTTCTTC TTCTTCTTCT TCTTCTTTTT GCTGCTTGAT
  CAATATGTTT ATTGTCTTTA TGAAAAAATC TTCATAGAAA ACTGTTTTAG CTTTCAGCAG
  CCCTTTCCTG AGCTCTGAGG AAGCTTGCCT TCTTTTGAGC AACCCGATCT TTTTTTCTGC
  R
  CAAGAGACAT TTTGGGACGA TTCCACCTCT TCTTTTTCAC TTCTCTCTTG GGCTTCTTCT
  CATAGACTGG ATTCTCTCAG ATAGCAGCAT GAGCTTTCTT ATACATCTCC TCCATCATGT
  CTGGAGTTAC GTTGTTCCTG ATGTACTGAG AGAACTGTTT CTTATACACA TCTTCATCTT
  CCTCCATTAG GTAGCGCATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51353371	NES13744226	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs38094099					SNP	A	A	A	A	A	G	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51353371	NES13744226	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83577865 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17607	CpG island 17607	1602 bp distal
Gm7424	predicted gene 7424	within coordinates
Rr632899	regulatory region 632899	1295 bp distal
Rr632901	regulatory region 632901	792 bp distal