rs38091942 SNP Detail

Summary

• ID
  rs38091942
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:22013469 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATCTATCT GCATCCTCAA
  ATGGAACAGA GAACTGAAAC CCTGGGGATT GATAGCAGCA TTAGCTTCAG GGATAAACTC
  CTTTAGTGGG ATTTTTATTG AATTCCTTAT TTCTCTGATA CCCAACACTT TATTTATTTA
  TTATTATTAT TATTTTAGAA TGCTTTAAGG AATACTGTCT GAAGATTCCC CCAAATCATC
  S
  TTCTTCAGTT ATTTTAGACA GTGCACCCTG TACCAAAATG TGTCACTCTT CTCTCTCAAG
  CTGCCTCGGG AACACCACTC CAATATCTAC TCATGTGGCA TTAGTTTTGA GGCACTTAAA
  AAAAAATTCT ATGAATCTAT CACTCCACCC AATGTCTACT GAGAGGAGGT AGCACTGACT
  TTTCTTGTTG CTATGACAAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51434196	NES14436523	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38091942					SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51434196	NES14436523	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:22013469 () rs orientation: forward

Symbol	Name	Function Class
Gm31813	predicted gene, 31813	within coordinates
Rr574174	regulatory region 574174	1842 bp distal
Rr574175	regulatory region 574175	559 bp distal
Rr574176	regulatory region 574176	165 bp distal
Tssr32752	transcription start site region 32752	663 bp upstream
Tssr32753	transcription start site region 32753	543 bp upstream