rs38088426 SNP Detail

Summary

• ID
  rs38088426
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:69765791 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTGGGGAT CCAAAAGGAC
  CTTTTCACAG TGGTCCCGTA AAACCATCTG TACATCAGAT ATTTAAATTA TGATTCATAA
  CAGTAGCAAA GTTACAGTTA TGAAGTAGCA GCAAAAATAA CGATGGTTAT TTGAATAGGA
  GGGACTGTAC TAAAGGGCTG CAGCATTAAG AAGGTTGAAA AGTACTGGTC TAAGTGATCC
  R
  TGTACAAAGT CATCACAGCG ATTAAAATTC ATGTAAATAG TGGTTACGGT AAGAGGCACA
  GGAGCAAACC AAATGTGGAA AGCAAGCGAT GAAGCTCTCC CCCCAGTTTT CTGCACACAT
  CATTTTAAAG GTTTTCTGGC AAAAATGGCT GTGTATTTCT TAGTATCATT TGATTAAAAA
  TAACAATTGC TGTCATAAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss50977798	NES13927109	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs38088426					SNP	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50977798	NES13927109	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:69765791 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13263	CpG island 13263	1749 bp proximal
Rr578229	regulatory region 578229	1275 bp proximal
Rr578230	regulatory region 578230	1454 bp proximal
Rr578231	regulatory region 578231	1794 bp proximal
Rr578232	regulatory region 578232	1854 bp proximal
Sptssb	serine palmitoyltransferase, small subunit B	Intron
Tssr903	transcription start site region 903	1397 bp downstream
Tssr33557	transcription start site region 33557	412 bp downstream
Tssr33558	transcription start site region 33558	1417 bp downstream