rs38078403 SNP Detail

Summary

• ID
  rs38078403
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:25303377 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCATCAGCA TGTCTATAAA
  GAGGAAATAA CTCATGAAAT TGATATCAGT TATGAGAATA AAGTTAGTTA CCAACTTCTT
  TAACAGAAGG ACATTGGCAA CAAGCTCAAG GACACTGAAG ACATAATAAT ATTGAATGTC
  AATGATGTTT ACAAGTGTGC TAATAAGTAT TTTGCAGAGA CAAAAATGGC GATTATTATC
  Y
  ATGCTTAAAA AACAAACACA GTATTGATTT TTTGTTGTTA TAATCATGAG TCACTGAAAA
  GCTATTACTG ACTAAGCTTA GTATGTATCA GGGAAGCTTT TCAAACAAGA TCTTACAATA
  TATACAATGT GGAAAAGGGA CCCTTCTCTC TAAGGCAGAG GTAGGCACTA CTGGGACCAT
  CTCTATCATC CATCTTAATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51565032	NES14859903	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38078403					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51565032	NES14859903	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:25303377 () rs orientation: forward

Symbol	Name	Function Class
Rr627291	regulatory region 627291	1444 bp proximal