rs38075316 SNP Detail

Summary

• ID
  rs38075316
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:75465626 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTATTGCAG GGTCTTTGGA
  TTGCAAAAGA TATGGGTTAA AGAAGCAAAT AATAAGATAG GATGGGTTCC GGCTAAACCT
  ATCCTAAGTA TAACTTTTAC CAGCATTAAT GAGAAAATAA ATTGAAATGG GTGGGTATTT
  GGCTTTTCCT TCCTGCTGGC GCTGGAATAT TGAAACAAAG ACCTGGGTTT AGCCTACAAC
  R
  GGAACATATG GTGTACTTCC TCGCTGCTTC TTATTCTCTC ATTTGTGTCC GGTAACGTTT
  GTTCGTGTTT TAAAAACAGG AGTACAAGGG AACTGTGTGG AGGAGCTTTC CTCTATTGAA
  GAGAGTATGT GTAAAATGAT AACCTTTAGT ATTTTATAAT GGGCTCTCAT TTTAGAGGTA
  TATAGTATCA CACAATAATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss51557822	NES14678961	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs38075316					SNP	G	G	A	G	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51557822	NES14678961	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:75465626 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13269	CpG island 13269			561 bp distal
Pdcd10	programmed cell death 10			1467 bp upstream
Rr578348	regulatory region 578348			1519 bp distal
Rr578349	regulatory region 578349			762 bp distal
Rr578350	regulatory region 578350			1461 bp distal
Rr578351	regulatory region 578351			within coordinates
Serpini1	serine (or cysteine) peptidase inhibitor, clade I, member 1			Intron
				Noncoding-Transcript-Variant
Tssr29563	transcription start site region 29563			798 bp downstream
Tssr29564	transcription start site region 29564			758 bp downstream
Tssr29565	transcription start site region 29565			732 bp downstream
Tssr29566	transcription start site region 29566			714 bp downstream
Tssr33586	transcription start site region 33586			1448 bp upstream
Tssr33587	transcription start site region 33587			1400 bp upstream
Tssr33588	transcription start site region 33588			1380 bp upstream