rs38069501 SNP Detail

Summary

• ID
  rs38069501
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146957166 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTGTATGT ATATGTATGC
  AAGCACAAAA AATGTATACA TATGGGTGCC TTCTGCACAC TGCAAAAATA GTAAATCTTA
  TATTACATCG ACTGTATTGA GAAGAAAAGG ACCTAGCTGC AGTAGTCTGG GATAAACTGT
  TCTTCCAGGT AATCAGGGTG GCTTTTTTTG TCCAGAACAG ATGCTACGAG ATCATATCTC
  Y
  GAGAGATGAA CTGAGAATGA ATCTACTTAA ATTATAGTGC GCACACAGAG GGTTTTAGCC
  TGTACATTTG TGCTGGAGAT TTATGACAGT GTCCATCCGG CAGAGTCAAT GAAGAGAGAG
  AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG
  AGAGAGAGAA ACATAATTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51049434	NES13898668	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38069501					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51049434	NES13898668	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146957166 () rs orientation: forward

Symbol	Name	Function Class
Rr587140	regulatory region 587140	1202 bp distal
Rr587141	regulatory region 587141	808 bp proximal