rs38066754 SNP Detail

Summary

• ID
  rs38066754
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:85804713 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGGCAGAG GCAGGCGGAT
  TTCTGAGTTC GAGGCCAGCC TGGTCTACAA AGTGAGGTCC AGGACAGCCA GGGCTATACA
  AAGAAACCCT GTCTCGAAAA ACCAAAAAAA AAAAAAAAAA AAAAAAAAGA ATTCAGTTAA
  TAATAGTGAA CAACAACAAC AACAACTAAA CTTAGGAACA AGCCAAGAAA GTGAAAAACA
  K
  TGACCCTTCT TCCCTTCGGA TTGTGTAAGT GCCCACAAGT GACCTTTGGA GCACTTAAAC
  TCCATCCTCA AAGCATTCTA CTCTTCCTCG TTAAAAGAAC TTGACTCCCT TGTCAATAAT
  CTCTCGATTA TACACTGAGA ACTATAAACT GTTGCTGAAA GAAATGAAAG GAAAATAAAT
  AAACAGAAAG CACTTCTGCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51034555	NES14384701	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	T	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs38066754					SNP	G	G	G	G	G	T	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51034555	NES14384701	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:85804713 () rs orientation: forward

Symbol	Name	Function Class
Flvcr2	feline leukemia virus subgroup C cellular receptor 2	Intron
Gm40478	predicted gene, 40478	within coordinates
Rr469999	regulatory region 469999	1096 bp distal
Rr470000	regulatory region 470000	558 bp distal
Tssr114432	transcription start site region 114432	1572 bp upstream
Tssr117101	transcription start site region 117101	1513 bp downstream