rs38066186 SNP Detail

Summary

• ID
  rs38066186
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:101469150 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CATTCCCCCC TAGAACAAAG GGGAACTCTG TTCTTTAAGA
  ATATTATCTG TTTATGGGGT CGGGGTGTTC CTTTGCCCAT GCTTGTGCTG TGGGATGTAC
  R
  AGGACATCAG AGGCCAGCTT ACTGGAATCA GTTCTTTTCT TCTCTCTTAC AGCAGAGTTT
  CTCTTTGGTA TTTCTTCTAT GCTATGTGCT CCAAGCTAG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51583988	NES14669487	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G	G	A	A		A	G		G
ss135548570	ENSMUSSNP4876052	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G
ss320852557	CHEV_3_101365757	CHEVERUD	SCREENING_POP	f	SNP										G			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs38066186					SNP	A	A	G	G	G	G	G	A	A	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51583988	NES14669487	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101469150 () rs orientation: forward

Symbol	Name	Function Class
Rr582081	regulatory region 582081	217 bp distal
Rr582082	regulatory region 582082	749 bp proximal