rs38065000 SNP Detail

Summary

• ID
  rs38065000
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:72622434 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTCCCCAG CTTCATGTCT
  TTGATTTGCA ATTACGGGAA TGATTCTCAA CTCTGGCTGC CCCTTAAAGT CGCCGTGGGG
  AGCTTAAAAA AAATTAAGAT ACCAGCCCCA CCCCAGCCCA ATTAAATCAT ATCCTTGGGG
  GATTAAGATG TTAAATTCTA TGGGCTCATT ATCTCTATTA CCTTCGCAAT CTGTCCACTT
  S
  TTTTGGCACC TAATTCGGGC CCTCATTACC TCTTAGTTCT GCTAATTAAA CTTGATGTTA
  ATTGTTCATT CCCTCTCTTA ATTTCTTAAC AATGACGACC GCAGCAGCAG TGGTGGCGAT
  GAGGGTGAAG TGTGGTGACG TTTGGAAAGC TAACCCTTAG TGAAGAGTTA CTTTGTGTTG
  GGCACAATGC TGAACTCATT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51694821	NES14819023	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38065000					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51694821	NES14819023	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72622434 () rs orientation: forward

Symbol	Name	Function Class
Gm38114	predicted gene, 38114	1366 bp upstream
Rr632258	regulatory region 632258	within coordinates
Rr632259	regulatory region 632259	1776 bp proximal
Tcf7l1	transcription factor 7 like 1 (T cell specific, HMG box)	Intron