rs38060012 SNP Detail

Summary

• ID
  rs38060012
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:86783952 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGCC CAAGTGCTGC AACAATCTTC
  Y
  TCTTAGCATT TCAAAAGCTA GGCAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	AKR/J	BALB/cByJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	SM/J	WSB/EiJ
ss51749221	NES14799575	PERLEGEN	MM_PANEL2	f	SNP		C	C		C		T		C
ss133359549	ENSMUSSNP4019374	ENSEMBL	ENSEMBL_Sanger	f	SNP	C			C
ss321847362	CHEV_6_86756964	CHEVERUD	SCREENING_POP	f	SNP						C		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	AKR/J	BALB/cByJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	SM/J	WSB/EiJ
rs38060012					SNP	C	C	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51749221	NES14799575	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:86783952 () rs orientation: forward

Symbol	Name	Function Class
D6Dcr21	DNA Segment, Chr 6, Derry C. Roopenian 21	44 bp distal
D6Mit29	DNA segment, Chr 6, Massachusetts Institute of Technology 29	43 bp distal
Rr633520	regulatory region 633520	47 bp distal
Rr633521	regulatory region 633521	336 bp distal
Rr633522	regulatory region 633522	1271 bp proximal