rs38059520 SNP Detail

Summary

• ID
  rs38059520
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:33536520 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTGGGGAC AATCCCGGGT
  TGTCAGGGTT GGCTGCATGG GCCTTTCCCC CTGAGCTGTC TCACTGACCC TGAAAAGGTT
  AACGTTCCAC ACTGTCCTAG AGCGTTACAA ATGTGACTGA GCAAGTGAAG CAGCATCCGA
  TGCTATTTTC CAAGTCCTGT GGTCCATCCC ATTTCCCAGA TTGAAAGGTA AACTACTGAT
  Y
  GCCAACTGCT TCCTTCTAGA TCAAAGAAGC TGATCTGAGA TACCTGTTAT GCAATGTGAC
  TATATTAAGG GTAGTCTGGC TATAAGATTA GATTTACCTT GTGTATAAGT ATAAGTATAA
  AATCAACGCC GTTCTTCCAA CAGATACTAT GGTATTTCAC ATCAGTGTAT AAAGTGCCCT
  GGGATCTGAC TTTCTGAGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50936138	NES13478512	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38059520					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50936138	NES13478512	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:33536520 () rs orientation: forward

Symbol	Name	Function Class
Prim2	DNA primase, p58 subunit	Intron
Rr408839	regulatory region 408839	1524 bp distal