rs38058763 SNP Detail

Summary

• ID
  rs38058763
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:149086273 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGAAGAGC TTGGATTATT
  ATTATTATTT TAAATCCAAT TGAAGGAGGA GCGCTAGCAA ACAGCAAAGA GCAATGTTAA
  CAGACACACA ATACAGCATC CATTTTCAAG GGTCACACCA GAAAAAAACC AAAAAACCAA
  AAACCGAAAA AAACAAAAAC TTAAATAAGG AAACAGAGTT ATCTCCTAGC AGGAACTGTG
  R
  CATGATTTTA AGCTTTGCTA CCGAGGGCGT CTTCTATATT ATGTATTATT GGATAATAAC
  TATCAATTAA AATTGGCTAA AAGATTAAAG AGCACTTTTC AAGCACTTAA CACACATGTT
  TACTAAATAC TGTGTGCGTG GCATTAAAGA ACACACTTGA AATGGATTTT CTACTTTATT
  TGTCACAATG GAGTGGGTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51052998	NES13894735	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38058763					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51052998	NES13894735	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:149086273 () rs orientation: forward

Symbol	Name	Function Class
Gm30382	predicted gene, 30382	within coordinates
Gm64772	predicted gene, 64772	550 bp upstream
Rr587318	regulatory region 587318	171 bp distal
Rr587319	regulatory region 587319	884 bp proximal