rs38058428 SNP Detail

Summary

• ID
  rs38058428
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:72592341 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTCCAGAT GGAAGATGGT
  TGGTATAGAA GCTAGAAATG GTAAACTATC TTAAGCCTGG AAAAGGGGGA AGAGGTCTAC
  ATATCAAGAG GCTGGGAATG ATCTGAGTTC CAAGTTAGGG GAGGGGAATT ACAGTTAGGT
  CAGGTCATGA CTCACGTCCA ACTTGGCACT TTACAGCAGA ACTGAGAGGA AACAAGTCAC
  R
  TGATGAAAAC ACCTGATTTA CAAAACTTAG TTTTATAAGC CCCAGCAGGG TCTATGGAAA
  AAACAAGATG ATCTTAAAAT TCTCAAAGCT CACAGGCAGA TGAGTGACAG ATAGCTGTCC
  ATGAACAAAG AACTTAGGGT CCTGGAAATC CCAGTCCCCT CTTACCTTTC GTTTGTTGTG
  GTAAGCAATA TAGAGGACAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51695130	NES14819720	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38058428					SNP	A	A	A	A	A	A	A	A	A	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51695130	NES14819720	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72592341 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17549	CpG island 17549	780 bp proximal
Gm20536	predicted gene 20536	within coordinates
Gm67593	predicted gene, 67593	1415 bp upstream
Rr399708	regulatory region 399708	1284 bp upstream
Rr632243	regulatory region 632243	within coordinates
Rr632244	regulatory region 632244	925 bp proximal
Rr632245	regulatory region 632245	1378 bp proximal
Rr632246	regulatory region 632246	1470 bp proximal
Rr632247	regulatory region 632247	1632 bp proximal
Tgoln1	trans-golgi network protein	Intron
Tssr57152	transcription start site region 57152	1497 bp upstream
Tssr61478	transcription start site region 61478	1367 bp downstream