rs38054988 SNP Detail

Summary

• ID
  rs38054988
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:77387312 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGTCTTGA AATTTCACAG
  AGCTGCTTGC TTTCTTTTTT TTGGTTTCTT TTTGAACCAA GCAGTCTGAT ACTGCCTGCC
  CCACCCCCAA AACAACCTTC GAGCAACCAG CACTCAGATG GAACCAAACT CATATGTCGC
  TACCACCTTA GGAGACCTCA GTTCTGCCCA CAGGGGGACA TGGCCTTCCT ATATGTGTTG
  R
  TTCAGGACAA ACCTCCCCGA AGTACCTCAA CAAACAGAAG CCAAACCAAA GCAAGCAGGA
  TCTTGGATTA TTTGCCATTG GCTTTGAAAC AGTTGTGCAT CCTCCTGGGG AGGAAGCAGC
  TGGCTTTGCT CTTTGTAAAG CAGCCAATCT TGGCGATCCC AAGGTTCTGC ATCCGGAGAA
  CTCACCCCTA TGGTGGCCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss50884831	NES14161848	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs38054988					SNP	A	A	A	A	A	A	A	A	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50884831	NES14161848	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:77387312 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Itgb2	integrin beta 2			Intron
				Noncoding-Transcript-Variant
Tssr94242	transcription start site region 94242			1828 bp downstream
Tssr94243	transcription start site region 94243			971 bp downstream
Tssr94244	transcription start site region 94244			562 bp downstream