rs38052134 SNP Detail

Summary

• ID
  rs38052134
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:152776711 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACATGTATA TACATGCACA
  CACATGTACA TGCACACACA AACACACATG CATAGGCACA TACATGCGCA CACAAACACA
  CATGTATATA CATGTACACA CACATACAAA CATGCACACA AACACACACA CACACACACA
  AATGTATATA CATACAACTT CTGGAAAAGT GTGTTTAGCC TTGGTCTTGT TCTTAAAACC
  Y
  TGAAAGTAAG GCTTGGAACC CACTGAGACC TGAAAAACCA TGGTAGCCAC TGAAACTCTC
  TGTGTTTCTG CCTTCCTTTG TAAACTTGTT TGCTCAGATA CTGAGCCCCT TTTAGAGCCC
  TGAGGATTTC CATCCAGAAA AGTTTTCTAA CCAAGCTGAC TGTGAAATAC TCAAACAATT
  GCCTATCTGA GGAGAACATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51061748	NES13892843	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38052134					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51061748	NES13892843	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152776711 () rs orientation: forward

Symbol	Name	Function Class
Gm16213	predicted gene 16213	within coordinates
Gm40182	predicted gene, 40182	within coordinates
Rr587647	regulatory region 587647	60 bp proximal
Rr587648	regulatory region 587648	1227 bp proximal